منابع مشابه
GraP: platform for functional genomics analysis of Gossypium raimondii
Cotton (Gossypium spp.) is one of the most important natural fiber and oil crops worldwide. Improvement of fiber yield and quality under changing environments attract much attention from cotton researchers; however, a functional analysis platform integrating omics data is still missing. The success of cotton genome sequencing and large amount of available transcriptome data allows the opportuni...
متن کاملGenome-Wide Survey and Expression Analysis of Calcium-Dependent Protein Kinase in Gossypium raimondii
Calcium-dependent protein kinases (CDPKs) are one of the largest protein kinases in plants and participate in different physiological processes through regulating downstream components of calcium signaling pathways. In this study, 41 CDPK genes, from GrCPK1 to GrCPK41, were identified in the genome of the diploid cotton, Gossypium raimondii. The phylogenetic analysis indicated that all these ge...
متن کاملGenome-Wide Analysis of the RNA Helicase Gene Family in Gossypium raimondii
The RNA helicases, which help to unwind stable RNA duplexes, and have important roles in RNA metabolism, belong to a class of motor proteins that play important roles in plant development and responses to stress. Although this family of genes has been the subject of systematic investigation in Arabidopsis, rice, and tomato, it has not yet been characterized in cotton. In this study, we identifi...
متن کاملDistribution and characterization of simple sequence repeats in Gossypium raimondii genome
Simple sequence repeats (SSRs) can be derived from the complete genome sequence. These markers are important for gene mapping as well as marker-assisted selection (MAS). To develop SSRs for cotton gene mapping, we selected the complete genome sequence of Gossypium raimondii, which consisted of 4447 non-redundant scaffolds. Out of 775.2 Mb sequence examined, a total of 136,345 microsatellites we...
متن کاملA Cluster of Recently Inserted Transposable Elements Associated with siRNAs in Gossypium raimondii
Stabilization of transposable element (TE) copy number involves the biosynthesis of short silencing RNAs (siRNAs) and further initialization of siRNA-mediated TE silencing. To gain insight into the relationship between the biosynthesis of siRNAs and their source TEs, we examined the co-evolutionary dynamics and expression of these two entities by characterizing the siRNA distribution across the...
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ژورنال
عنوان ژورنال: Nature
سال: 1940
ISSN: 0028-0836,1476-4687
DOI: 10.1038/145553a0